All Models¶
pyod.models.abod module¶
Angle-based Outlier Detector (ABOD)
- class pyod.models.abod.ABOD(contamination=0.1, n_neighbors=5, method='fast')[source]¶
Bases:
pyod.models.base.BaseDetector
ABOD class for Angle-base Outlier Detection. For an observation, the variance of its weighted cosine scores to all neighbors could be viewed as the outlying score. See [BKZ+08] for details.
Two version of ABOD are supported:
Fast ABOD: use k nearest neighbors to approximate.
Original ABOD: consider all training points with high time complexity at O(n^3).
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_neighbors (int, optional (default=10)) – Number of neighbors to use by default for k neighbors queries.
method (str, optional (default='fast')) –
Valid values for metric are:
’fast’: fast ABOD. Only consider n_neighbors of training points
’default’: original ABOD with all training points, which could be slow
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.auto_encoder module¶
Using Auto Encoder with Outlier Detection
- class pyod.models.auto_encoder.AutoEncoder(hidden_neurons=None, hidden_activation='relu', output_activation='sigmoid', loss=<function mean_squared_error>, optimizer='adam', epochs=100, batch_size=32, dropout_rate=0.2, l2_regularizer=0.1, validation_size=0.1, preprocessing=True, verbose=1, random_state=None, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Auto Encoder (AE) is a type of neural networks for learning useful data representations unsupervisedly. Similar to PCA, AE could be used to detect outlying objects in the data by calculating the reconstruction errors. See [BAgg15] Chapter 3 for details.
- Parameters
hidden_neurons (list, optional (default=[64, 32, 32, 64])) – The number of neurons per hidden layers.
hidden_activation (str, optional (default='relu')) – Activation function to use for hidden layers. All hidden layers are forced to use the same type of activation. See https://keras.io/activations/
output_activation (str, optional (default='sigmoid')) – Activation function to use for output layer. See https://keras.io/activations/
loss (str or obj, optional (default=keras.losses.mean_squared_error)) – String (name of objective function) or objective function. See https://keras.io/losses/
optimizer (str, optional (default='adam')) – String (name of optimizer) or optimizer instance. See https://keras.io/optimizers/
epochs (int, optional (default=100)) – Number of epochs to train the model.
batch_size (int, optional (default=32)) – Number of samples per gradient update.
dropout_rate (float in (0., 1), optional (default=0.2)) – The dropout to be used across all layers.
l2_regularizer (float in (0., 1), optional (default=0.1)) – The regularization strength of activity_regularizer applied on each layer. By default, l2 regularizer is used. See https://keras.io/regularizers/
validation_size (float in (0., 1), optional (default=0.1)) – The percentage of data to be used for validation.
preprocessing (bool, optional (default=True)) – If True, apply standardization on the data.
verbose (int, optional (default=1)) –
Verbosity mode.
0 = silent
1 = progress bar
2 = one line per epoch.
For verbose >= 1, model summary may be printed.
random_state (random_state: int, RandomState instance or None, optional) – (default=None) If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the decision function.
- compression_rate_¶
The ratio between the original feature and the number of neurons in the encoding layer.
- Type
- model_¶
The underlying AutoEncoder in Keras.
- Type
Keras Object
- history_¶
The AutoEncoder training history.
- Type
Keras Object
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.auto_encoder_torch module¶
Using AutoEncoder with Outlier Detection (PyTorch)
- class pyod.models.auto_encoder_torch.AutoEncoder(hidden_neurons=None, hidden_activation='relu', batch_norm=True, learning_rate=0.001, epochs=100, batch_size=32, dropout_rate=0.2, weight_decay=1e-05, preprocessing=True, loss_fn=None, contamination=0.1, device=None)[source]¶
Bases:
pyod.models.base.BaseDetector
Auto Encoder (AE) is a type of neural networks for learning useful data representations in an unsupervised manner. Similar to PCA, AE could be used to detect outlying objects in the data by calculating the reconstruction errors. See [BAgg15] Chapter 3 for details.
Notes
This is the PyTorch version of AutoEncoder. See auto_encoder.py for the TensorFlow version.
The documentation is not finished!
- Parameters
hidden_neurons (list, optional (default=[64, 32])) – The number of neurons per hidden layers. So the network has the structure as [n_features, 64, 32, 32, 64, n_features]
hidden_activation (str, optional (default='relu')) – Activation function to use for hidden layers. All hidden layers are forced to use the same type of activation. See https://keras.io/activations/
batch_norm (boolean, optional (default=True)) – Whether to apply Batch Normalization, See https://pytorch.org/docs/stable/generated/torch.nn.BatchNorm1d.html
loss (str or obj, optional (default=torch.nn.MSELoss)) – String (name of objective function) or objective function. NOT SUPPORT FOR CHANGE YET.
optimizer (str, optional (default='adam')) – String (name of optimizer) or optimizer instance. NOT SUPPORT FOR CHANGE YET.
epochs (int, optional (default=100)) – Number of epochs to train the model.
batch_size (int, optional (default=32)) – Number of samples per gradient update.
dropout_rate (float in (0., 1), optional (default=0.2)) – The dropout to be used across all layers.
l2_regularizer (float in (0., 1), optional (default=0.1)) – The regularization strength of activity_regularizer applied on each layer. By default, l2 regularizer is used. See https://keras.io/regularizers/
validation_size (float in (0., 1), optional (default=0.1)) – The percentage of data to be used for validation.
preprocessing (bool, optional (default=True)) – If True, apply standardization on the data.
verbose (int, optional (default=1)) –
Verbosity mode.
0 = silent
1 = progress bar
2 = one line per epoch.
For verbose >= 1, model summary may be printed.
random_state (random_state: int, RandomState instance or None, optional) – (default=None) If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the decision function.
- compression_rate_¶
The ratio between the original feature and the number of neurons in the encoding layer.
- Type
- model_¶
The underlying AutoEncoder in Keras.
- Type
Keras Object
- history_¶
The AutoEncoder training history.
- Type
Keras Object
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
- class pyod.models.auto_encoder_torch.PyODDataset(X, y=None, mean=None, std=None)[source]¶
Bases:
Generic
[torch.utils.data.dataset.T_co
]PyOD Dataset class for PyTorch Dataloader
- class pyod.models.auto_encoder_torch.inner_autoencoder(n_features, hidden_neurons=[128, 64], dropout_rate=0.2, batch_norm=True, hidden_activation='relu')[source]¶
Bases:
torch.nn.modules.module.Module
- add_module(name: str, module: Optional[torch.nn.modules.module.Module]) None ¶
Adds a child module to the current module.
The module can be accessed as an attribute using the given name.
- Parameters
name (string) – name of the child module. The child module can be accessed from this module using the given name
module (Module) – child module to be added to the module.
- apply(fn: Callable[[torch.nn.modules.module.Module], None]) torch.nn.modules.module.T ¶
Applies
fn
recursively to every submodule (as returned by.children()
) as well as self. Typical use includes initializing the parameters of a model (see also nn-init-doc).- Parameters
fn (
Module
-> None) – function to be applied to each submodule- Returns
self
- Return type
Module
Example:
>>> @torch.no_grad() >>> def init_weights(m): >>> print(m) >>> if type(m) == nn.Linear: >>> m.weight.fill_(1.0) >>> print(m.weight) >>> net = nn.Sequential(nn.Linear(2, 2), nn.Linear(2, 2)) >>> net.apply(init_weights) Linear(in_features=2, out_features=2, bias=True) Parameter containing: tensor([[ 1., 1.], [ 1., 1.]]) Linear(in_features=2, out_features=2, bias=True) Parameter containing: tensor([[ 1., 1.], [ 1., 1.]]) Sequential( (0): Linear(in_features=2, out_features=2, bias=True) (1): Linear(in_features=2, out_features=2, bias=True) ) Sequential( (0): Linear(in_features=2, out_features=2, bias=True) (1): Linear(in_features=2, out_features=2, bias=True) )
- bfloat16() torch.nn.modules.module.T ¶
Casts all floating point parameters and buffers to
bfloat16
datatype.Note
This method modifies the module in-place.
- Returns
self
- Return type
Module
- buffers(recurse: bool = True) Iterator[torch.Tensor] ¶
Returns an iterator over module buffers.
- Parameters
recurse (bool) – if True, then yields buffers of this module and all submodules. Otherwise, yields only buffers that are direct members of this module.
- Yields
torch.Tensor – module buffer
Example:
>>> for buf in model.buffers(): >>> print(type(buf), buf.size()) <class 'torch.Tensor'> (20L,) <class 'torch.Tensor'> (20L, 1L, 5L, 5L)
- children() Iterator[torch.nn.modules.module.Module] ¶
Returns an iterator over immediate children modules.
- Yields
Module – a child module
- cpu() torch.nn.modules.module.T ¶
Moves all model parameters and buffers to the CPU.
Note
This method modifies the module in-place.
- Returns
self
- Return type
Module
- cuda(device: Optional[Union[int, torch.device]] = None) torch.nn.modules.module.T ¶
Moves all model parameters and buffers to the GPU.
This also makes associated parameters and buffers different objects. So it should be called before constructing optimizer if the module will live on GPU while being optimized.
Note
This method modifies the module in-place.
- Parameters
device (int, optional) – if specified, all parameters will be copied to that device
- Returns
self
- Return type
Module
- double() torch.nn.modules.module.T ¶
Casts all floating point parameters and buffers to
double
datatype.Note
This method modifies the module in-place.
- Returns
self
- Return type
Module
- dump_patches: bool = False¶
This allows better BC support for
load_state_dict()
. Instate_dict()
, the version number will be saved as in the attribute _metadata of the returned state dict, and thus pickled. _metadata is a dictionary with keys that follow the naming convention of state dict. See_load_from_state_dict
on how to use this information in loading.If new parameters/buffers are added/removed from a module, this number shall be bumped, and the module’s _load_from_state_dict method can compare the version number and do appropriate changes if the state dict is from before the change.
- eval() torch.nn.modules.module.T ¶
Sets the module in evaluation mode.
This has any effect only on certain modules. See documentations of particular modules for details of their behaviors in training/evaluation mode, if they are affected, e.g.
Dropout
,BatchNorm
, etc.This is equivalent with
self.train(False)
.See locally-disable-grad-doc for a comparison between .eval() and several similar mechanisms that may be confused with it.
- Returns
self
- Return type
Module
- extra_repr() str ¶
Set the extra representation of the module
To print customized extra information, you should re-implement this method in your own modules. Both single-line and multi-line strings are acceptable.
- float() torch.nn.modules.module.T ¶
Casts all floating point parameters and buffers to
float
datatype.Note
This method modifies the module in-place.
- Returns
self
- Return type
Module
- forward(x)[source]¶
Defines the computation performed at every call.
Should be overridden by all subclasses.
Note
Although the recipe for forward pass needs to be defined within this function, one should call the
Module
instance afterwards instead of this since the former takes care of running the registered hooks while the latter silently ignores them.
- get_buffer(target: str) torch.Tensor ¶
Returns the buffer given by
target
if it exists, otherwise throws an error.See the docstring for
get_submodule
for a more detailed explanation of this method’s functionality as well as how to correctly specifytarget
.- Parameters
target – The fully-qualified string name of the buffer to look for. (See
get_submodule
for how to specify a fully-qualified string.)- Returns
The buffer referenced by
target
- Return type
torch.Tensor
- Raises
AttributeError – If the target string references an invalid path or resolves to something that is not a buffer
- get_parameter(target: str) torch.nn.parameter.Parameter ¶
Returns the parameter given by
target
if it exists, otherwise throws an error.See the docstring for
get_submodule
for a more detailed explanation of this method’s functionality as well as how to correctly specifytarget
.- Parameters
target – The fully-qualified string name of the Parameter to look for. (See
get_submodule
for how to specify a fully-qualified string.)- Returns
The Parameter referenced by
target
- Return type
torch.nn.Parameter
- Raises
AttributeError – If the target string references an invalid path or resolves to something that is not an
nn.Parameter
- get_submodule(target: str) torch.nn.modules.module.Module ¶
Returns the submodule given by
target
if it exists, otherwise throws an error.For example, let’s say you have an
nn.Module
A
that looks like this:(The diagram shows an
nn.Module
A
.A
has a nested submodulenet_b
, which itself has two submodulesnet_c
andlinear
.net_c
then has a submoduleconv
.)To check whether or not we have the
linear
submodule, we would callget_submodule("net_b.linear")
. To check whether we have theconv
submodule, we would callget_submodule("net_b.net_c.conv")
.The runtime of
get_submodule
is bounded by the degree of module nesting intarget
. A query againstnamed_modules
achieves the same result, but it is O(N) in the number of transitive modules. So, for a simple check to see if some submodule exists,get_submodule
should always be used.- Parameters
target – The fully-qualified string name of the submodule to look for. (See above example for how to specify a fully-qualified string.)
- Returns
The submodule referenced by
target
- Return type
torch.nn.Module
- Raises
AttributeError – If the target string references an invalid path or resolves to something that is not an
nn.Module
- half() torch.nn.modules.module.T ¶
Casts all floating point parameters and buffers to
half
datatype.Note
This method modifies the module in-place.
- Returns
self
- Return type
Module
- load_state_dict(state_dict: OrderedDict[str, Tensor], strict: bool = True)¶
Copies parameters and buffers from
state_dict
into this module and its descendants. Ifstrict
isTrue
, then the keys ofstate_dict
must exactly match the keys returned by this module’sstate_dict()
function.- Parameters
state_dict (dict) – a dict containing parameters and persistent buffers.
strict (bool, optional) – whether to strictly enforce that the keys in
state_dict
match the keys returned by this module’sstate_dict()
function. Default:True
- Returns
missing_keys is a list of str containing the missing keys
unexpected_keys is a list of str containing the unexpected keys
- Return type
NamedTuple
withmissing_keys
andunexpected_keys
fields
- modules() Iterator[torch.nn.modules.module.Module] ¶
Returns an iterator over all modules in the network.
- Yields
Module – a module in the network
Note
Duplicate modules are returned only once. In the following example,
l
will be returned only once.Example:
>>> l = nn.Linear(2, 2) >>> net = nn.Sequential(l, l) >>> for idx, m in enumerate(net.modules()): print(idx, '->', m) 0 -> Sequential( (0): Linear(in_features=2, out_features=2, bias=True) (1): Linear(in_features=2, out_features=2, bias=True) ) 1 -> Linear(in_features=2, out_features=2, bias=True)
- named_buffers(prefix: str = '', recurse: bool = True) Iterator[Tuple[str, torch.Tensor]] ¶
Returns an iterator over module buffers, yielding both the name of the buffer as well as the buffer itself.
- Parameters
- Yields
(string, torch.Tensor) – Tuple containing the name and buffer
Example:
>>> for name, buf in self.named_buffers(): >>> if name in ['running_var']: >>> print(buf.size())
- named_children() Iterator[Tuple[str, torch.nn.modules.module.Module]] ¶
Returns an iterator over immediate children modules, yielding both the name of the module as well as the module itself.
- Yields
(string, Module) – Tuple containing a name and child module
Example:
>>> for name, module in model.named_children(): >>> if name in ['conv4', 'conv5']: >>> print(module)
- named_modules(memo: Optional[Set[torch.nn.modules.module.Module]] = None, prefix: str = '', remove_duplicate: bool = True)¶
Returns an iterator over all modules in the network, yielding both the name of the module as well as the module itself.
- Parameters
memo – a memo to store the set of modules already added to the result
prefix – a prefix that will be added to the name of the module
remove_duplicate – whether to remove the duplicated module instances in the result
not (or) –
- Yields
(string, Module) – Tuple of name and module
Note
Duplicate modules are returned only once. In the following example,
l
will be returned only once.Example:
>>> l = nn.Linear(2, 2) >>> net = nn.Sequential(l, l) >>> for idx, m in enumerate(net.named_modules()): print(idx, '->', m) 0 -> ('', Sequential( (0): Linear(in_features=2, out_features=2, bias=True) (1): Linear(in_features=2, out_features=2, bias=True) )) 1 -> ('0', Linear(in_features=2, out_features=2, bias=True))
- named_parameters(prefix: str = '', recurse: bool = True) Iterator[Tuple[str, torch.nn.parameter.Parameter]] ¶
Returns an iterator over module parameters, yielding both the name of the parameter as well as the parameter itself.
- Parameters
- Yields
(string, Parameter) – Tuple containing the name and parameter
Example:
>>> for name, param in self.named_parameters(): >>> if name in ['bias']: >>> print(param.size())
- parameters(recurse: bool = True) Iterator[torch.nn.parameter.Parameter] ¶
Returns an iterator over module parameters.
This is typically passed to an optimizer.
- Parameters
recurse (bool) – if True, then yields parameters of this module and all submodules. Otherwise, yields only parameters that are direct members of this module.
- Yields
Parameter – module parameter
Example:
>>> for param in model.parameters(): >>> print(type(param), param.size()) <class 'torch.Tensor'> (20L,) <class 'torch.Tensor'> (20L, 1L, 5L, 5L)
- register_backward_hook(hook: Callable[[torch.nn.modules.module.Module, Union[Tuple[torch.Tensor, ...], torch.Tensor], Union[Tuple[torch.Tensor, ...], torch.Tensor]], Union[None, torch.Tensor]]) torch.utils.hooks.RemovableHandle ¶
Registers a backward hook on the module.
This function is deprecated in favor of
nn.Module.register_full_backward_hook()
and the behavior of this function will change in future versions.- Returns
a handle that can be used to remove the added hook by calling
handle.remove()
- Return type
torch.utils.hooks.RemovableHandle
- register_buffer(name: str, tensor: Optional[torch.Tensor], persistent: bool = True) None ¶
Adds a buffer to the module.
This is typically used to register a buffer that should not to be considered a model parameter. For example, BatchNorm’s
running_mean
is not a parameter, but is part of the module’s state. Buffers, by default, are persistent and will be saved alongside parameters. This behavior can be changed by settingpersistent
toFalse
. The only difference between a persistent buffer and a non-persistent buffer is that the latter will not be a part of this module’sstate_dict
.Buffers can be accessed as attributes using given names.
- Parameters
name (string) – name of the buffer. The buffer can be accessed from this module using the given name
tensor (Tensor) – buffer to be registered.
persistent (bool) – whether the buffer is part of this module’s
state_dict
.
Example:
>>> self.register_buffer('running_mean', torch.zeros(num_features))
- register_forward_hook(hook: Callable[[...], None]) torch.utils.hooks.RemovableHandle ¶
Registers a forward hook on the module.
The hook will be called every time after
forward()
has computed an output. It should have the following signature:hook(module, input, output) -> None or modified output
The input contains only the positional arguments given to the module. Keyword arguments won’t be passed to the hooks and only to the
forward
. The hook can modify the output. It can modify the input inplace but it will not have effect on forward since this is called afterforward()
is called.- Returns
a handle that can be used to remove the added hook by calling
handle.remove()
- Return type
torch.utils.hooks.RemovableHandle
- register_forward_pre_hook(hook: Callable[[...], None]) torch.utils.hooks.RemovableHandle ¶
Registers a forward pre-hook on the module.
The hook will be called every time before
forward()
is invoked. It should have the following signature:hook(module, input) -> None or modified input
The input contains only the positional arguments given to the module. Keyword arguments won’t be passed to the hooks and only to the
forward
. The hook can modify the input. User can either return a tuple or a single modified value in the hook. We will wrap the value into a tuple if a single value is returned(unless that value is already a tuple).- Returns
a handle that can be used to remove the added hook by calling
handle.remove()
- Return type
torch.utils.hooks.RemovableHandle
- register_full_backward_hook(hook: Callable[[torch.nn.modules.module.Module, Union[Tuple[torch.Tensor, ...], torch.Tensor], Union[Tuple[torch.Tensor, ...], torch.Tensor]], Union[None, torch.Tensor]]) torch.utils.hooks.RemovableHandle ¶
Registers a backward hook on the module.
The hook will be called every time the gradients with respect to module inputs are computed. The hook should have the following signature:
hook(module, grad_input, grad_output) -> tuple(Tensor) or None
The
grad_input
andgrad_output
are tuples that contain the gradients with respect to the inputs and outputs respectively. The hook should not modify its arguments, but it can optionally return a new gradient with respect to the input that will be used in place ofgrad_input
in subsequent computations.grad_input
will only correspond to the inputs given as positional arguments and all kwarg arguments are ignored. Entries ingrad_input
andgrad_output
will beNone
for all non-Tensor arguments.Warning
Modifying inputs or outputs inplace is not allowed when using backward hooks and will raise an error.
- Returns
a handle that can be used to remove the added hook by calling
handle.remove()
- Return type
torch.utils.hooks.RemovableHandle
- register_parameter(name: str, param: Optional[torch.nn.parameter.Parameter]) None ¶
Adds a parameter to the module.
The parameter can be accessed as an attribute using given name.
- Parameters
name (string) – name of the parameter. The parameter can be accessed from this module using the given name
param (Parameter) – parameter to be added to the module.
- requires_grad_(requires_grad: bool = True) torch.nn.modules.module.T ¶
Change if autograd should record operations on parameters in this module.
This method sets the parameters’
requires_grad
attributes in-place.This method is helpful for freezing part of the module for finetuning or training parts of a model individually (e.g., GAN training).
See locally-disable-grad-doc for a comparison between .requires_grad_() and several similar mechanisms that may be confused with it.
- Parameters
requires_grad (bool) – whether autograd should record operations on parameters in this module. Default:
True
.- Returns
self
- Return type
Module
See
torch.Tensor.share_memory_()
- state_dict(destination=None, prefix='', keep_vars=False)¶
Returns a dictionary containing a whole state of the module.
Both parameters and persistent buffers (e.g. running averages) are included. Keys are corresponding parameter and buffer names.
- Returns
a dictionary containing a whole state of the module
- Return type
Example:
>>> module.state_dict().keys() ['bias', 'weight']
- to(*args, **kwargs)¶
Moves and/or casts the parameters and buffers.
This can be called as
- to(device=None, dtype=None, non_blocking=False)¶
- to(dtype, non_blocking=False)¶
- to(tensor, non_blocking=False)¶
- to(memory_format=torch.channels_last)¶
Its signature is similar to
torch.Tensor.to()
, but only accepts floating point or complexdtype`s. In addition, this method will only cast the floating point or complex parameters and buffers to :attr:`dtype
(if given). The integral parameters and buffers will be moveddevice
, if that is given, but with dtypes unchanged. Whennon_blocking
is set, it tries to convert/move asynchronously with respect to the host if possible, e.g., moving CPU Tensors with pinned memory to CUDA devices.See below for examples.
Note
This method modifies the module in-place.
- Parameters
device (
torch.device
) – the desired device of the parameters and buffers in this moduledtype (
torch.dtype
) – the desired floating point or complex dtype of the parameters and buffers in this moduletensor (torch.Tensor) – Tensor whose dtype and device are the desired dtype and device for all parameters and buffers in this module
memory_format (
torch.memory_format
) – the desired memory format for 4D parameters and buffers in this module (keyword only argument)
- Returns
self
- Return type
Module
Examples:
>>> linear = nn.Linear(2, 2) >>> linear.weight Parameter containing: tensor([[ 0.1913, -0.3420], [-0.5113, -0.2325]]) >>> linear.to(torch.double) Linear(in_features=2, out_features=2, bias=True) >>> linear.weight Parameter containing: tensor([[ 0.1913, -0.3420], [-0.5113, -0.2325]], dtype=torch.float64) >>> gpu1 = torch.device("cuda:1") >>> linear.to(gpu1, dtype=torch.half, non_blocking=True) Linear(in_features=2, out_features=2, bias=True) >>> linear.weight Parameter containing: tensor([[ 0.1914, -0.3420], [-0.5112, -0.2324]], dtype=torch.float16, device='cuda:1') >>> cpu = torch.device("cpu") >>> linear.to(cpu) Linear(in_features=2, out_features=2, bias=True) >>> linear.weight Parameter containing: tensor([[ 0.1914, -0.3420], [-0.5112, -0.2324]], dtype=torch.float16) >>> linear = nn.Linear(2, 2, bias=None).to(torch.cdouble) >>> linear.weight Parameter containing: tensor([[ 0.3741+0.j, 0.2382+0.j], [ 0.5593+0.j, -0.4443+0.j]], dtype=torch.complex128) >>> linear(torch.ones(3, 2, dtype=torch.cdouble)) tensor([[0.6122+0.j, 0.1150+0.j], [0.6122+0.j, 0.1150+0.j], [0.6122+0.j, 0.1150+0.j]], dtype=torch.complex128)
- to_empty(*, device: Union[str, torch.device]) torch.nn.modules.module.T ¶
Moves the parameters and buffers to the specified device without copying storage.
- Parameters
device (
torch.device
) – The desired device of the parameters and buffers in this module.- Returns
self
- Return type
Module
- train(mode: bool = True) torch.nn.modules.module.T ¶
Sets the module in training mode.
This has any effect only on certain modules. See documentations of particular modules for details of their behaviors in training/evaluation mode, if they are affected, e.g.
Dropout
,BatchNorm
, etc.- Parameters
mode (bool) – whether to set training mode (
True
) or evaluation mode (False
). Default:True
.- Returns
self
- Return type
Module
- type(dst_type: Union[torch.dtype, str]) torch.nn.modules.module.T ¶
Casts all parameters and buffers to
dst_type
.Note
This method modifies the module in-place.
- Parameters
dst_type (type or string) – the desired type
- Returns
self
- Return type
Module
- xpu(device: Optional[Union[int, torch.device]] = None) torch.nn.modules.module.T ¶
Moves all model parameters and buffers to the XPU.
This also makes associated parameters and buffers different objects. So it should be called before constructing optimizer if the module will live on XPU while being optimized.
Note
This method modifies the module in-place.
- Parameters
device (int, optional) – if specified, all parameters will be copied to that device
- Returns
self
- Return type
Module
pyod.models.cblof module¶
Clustering Based Local Outlier Factor (CBLOF)
- class pyod.models.cblof.CBLOF(n_clusters=8, contamination=0.1, clustering_estimator=None, alpha=0.9, beta=5, use_weights=False, check_estimator=False, random_state=None, n_jobs=1)[source]¶
Bases:
pyod.models.base.BaseDetector
The CBLOF operator calculates the outlier score based on cluster-based local outlier factor.
CBLOF takes as an input the data set and the cluster model that was generated by a clustering algorithm. It classifies the clusters into small clusters and large clusters using the parameters alpha and beta. The anomaly score is then calculated based on the size of the cluster the point belongs to as well as the distance to the nearest large cluster.
Use weighting for outlier factor based on the sizes of the clusters as proposed in the original publication. Since this might lead to unexpected behavior (outliers close to small clusters are not found), it is disabled by default.Outliers scores are solely computed based on their distance to the closest large cluster center.
By default, kMeans is used for clustering algorithm instead of Squeezer algorithm mentioned in the original paper for multiple reasons.
See [BHXD03] for details.
- Parameters
n_clusters (int, optional (default=8)) – The number of clusters to form as well as the number of centroids to generate.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
clustering_estimator (Estimator, optional (default=None)) –
The base clustering algorithm for performing data clustering. A valid clustering algorithm should be passed in. The estimator should have standard sklearn APIs, fit() and predict(). The estimator should have attributes
labels_
andcluster_centers_
. Ifcluster_centers_
is not in the attributes once the model is fit, it is calculated as the mean of the samples in a cluster.If not set, CBLOF uses KMeans for scalability. See https://scikit-learn.org/stable/modules/generated/sklearn.cluster.KMeans.html
alpha (float in (0.5, 1), optional (default=0.9)) – Coefficient for deciding small and large clusters. The ratio of the number of samples in large clusters to the number of samples in small clusters.
beta (int or float in (1,), optional (default=5)) – Coefficient for deciding small and large clusters. For a list sorted clusters by size |C1|, |C2|, …, |Cn|, beta = |Ck|/|Ck-1|
use_weights (bool, optional (default=False)) – If set to True, the size of clusters are used as weights in outlier score calculation.
check_estimator (bool, optional (default=False)) –
If set to True, check whether the base estimator is consistent with sklearn standard.
Warning
check_estimator may throw errors with scikit-learn 0.20 above.
random_state (int, RandomState or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
n_jobs (integer, optional (default=1)) – The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the number of cores.
- clustering_estimator_¶
Base estimator for clustering.
- Type
Estimator, sklearn instance
- cluster_labels_¶
Cluster assignment for the training samples.
- Type
list of shape (n_samples,)
- cluster_sizes_¶
The size of each cluster once fitted with the training data.
- Type
list of shape (n_clusters_,)
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- cluster_centers_¶
The center of each cluster.
- Type
numpy array of shape (n_clusters_, n_features)
- small_cluster_labels_¶
The cluster assignments belonging to small clusters.
- Type
list of clusters numbers
- large_cluster_labels_¶
The cluster assignments belonging to large clusters.
- Type
list of clusters numbers
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.cof module¶
Connectivity-Based Outlier Factor (COF) Algorithm
- class pyod.models.cof.COF(contamination=0.1, n_neighbors=20, method='fast')[source]¶
Bases:
pyod.models.base.BaseDetector
Connectivity-Based Outlier Factor (COF) COF uses the ratio of average chaining distance of data point and the average of average chaining distance of k nearest neighbor of the data point, as the outlier score for observations.
See [BTCFC02] for details.
Two version of COF are supported:
Fast COF: computes the entire pairwise distance matrix at the cost of a O(n^2) memory requirement.
Memory efficient COF: calculates pairwise distances incrementally. Use this implementation when it is not feasible to fit the n-by-n distance in memory. This leads to a linear overhead because many distances will have to be recalculated.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_neighbors (int, optional (default=20)) – Number of neighbors to use by default for k neighbors queries. Note that n_neighbors should be less than the number of samples. If n_neighbors is larger than the number of samples provided, all samples will be used.
method (string, optional (default='fast')) –
Valid values for method are:
’fast’ Fast COF, computes the full pairwise distance matrix up front.
’memory’ Memory-efficient COF, computes pairwise distances only when needed at the cost of computational speed.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector. The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.combination module¶
A collection of model combination functionalities.
- pyod.models.combination.aom(scores, n_buckets=5, method='static', bootstrap_estimators=False, random_state=None)[source]¶
Average of Maximum - An ensemble method for combining multiple estimators. See [BAS15] for details.
First dividing estimators into subgroups, take the maximum score as the subgroup score. Finally, take the average of all subgroup outlier scores.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – The score matrix outputted from various estimators
n_buckets (int, optional (default=5)) – The number of subgroups to build
method (str, optional (default='static')) – {‘static’, ‘dynamic’}, if ‘dynamic’, build subgroups randomly with dynamic bucket size.
bootstrap_estimators (bool, optional (default=False)) – Whether estimators are drawn with replacement.
random_state (int, RandomState instance or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
- Returns
combined_scores – The combined outlier scores.
- Return type
Numpy array of shape (n_samples,)
- pyod.models.combination.average(scores, estimator_weights=None)[source]¶
Combination method to merge the outlier scores from multiple estimators by taking the average.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – Score matrix from multiple estimators on the same samples.
estimator_weights (list of shape (1, n_estimators)) – If specified, using weighted average
- Returns
combined_scores – The combined outlier scores.
- Return type
numpy array of shape (n_samples, )
- pyod.models.combination.majority_vote(scores, weights=None)[source]¶
Combination method to merge the scores from multiple estimators by majority vote.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – Score matrix from multiple estimators on the same samples.
- weightsnumpy array of shape (1, n_estimators)
If specified, using weighted majority weight.
- Returns
combined_scores – The combined scores.
- Return type
numpy array of shape (n_samples, )
- pyod.models.combination.maximization(scores)[source]¶
Combination method to merge the outlier scores from multiple estimators by taking the maximum.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – Score matrix from multiple estimators on the same samples.
- Returns
combined_scores – The combined outlier scores.
- Return type
numpy array of shape (n_samples, )
- pyod.models.combination.median(scores)[source]¶
Combination method to merge the scores from multiple estimators by taking the median.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – Score matrix from multiple estimators on the same samples.
- Returns
combined_scores – The combined scores.
- Return type
numpy array of shape (n_samples, )
- pyod.models.combination.moa(scores, n_buckets=5, method='static', bootstrap_estimators=False, random_state=None)[source]¶
Maximization of Average - An ensemble method for combining multiple estimators. See [BAS15] for details.
First dividing estimators into subgroups, take the average score as the subgroup score. Finally, take the maximization of all subgroup outlier scores.
- Parameters
scores (numpy array of shape (n_samples, n_estimators)) – The score matrix outputted from various estimators
n_buckets (int, optional (default=5)) – The number of subgroups to build
method (str, optional (default='static')) – {‘static’, ‘dynamic’}, if ‘dynamic’, build subgroups randomly with dynamic bucket size.
bootstrap_estimators (bool, optional (default=False)) – Whether estimators are drawn with replacement.
random_state (int, RandomState instance or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
- Returns
combined_scores – The combined outlier scores.
- Return type
Numpy array of shape (n_samples,)
pyod.models.copod module¶
Copula Based Outlier Detector (COPOD)
- class pyod.models.copod.COPOD(contamination=0.1, n_jobs=1)[source]¶
Bases:
pyod.models.base.BaseDetector
COPOD class for Copula Based Outlier Detector. COPOD is a parameter-free, highly interpretable outlier detection algorithm based on empirical copula models. See [BLZB+20] for details.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_jobs (optional (default=1)) – The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the number of cores.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
- Predict raw anomaly score of X using the fitted detector.
For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- explain_outlier(ind, columns=None, cutoffs=None, feature_names=None)[source]¶
- Plot dimensional outlier graph for a given data
point within the dataset.
- Parameters
ind (int) – The index of the data point one wishes to obtain a dimensional outlier graph for.
columns (list) – Specify a list of features/dimensions for plotting.
cutoffs (list of floats in (0., 1), optional (default=[0.95, 0.99])) – The significance cutoff bands of the dimensional outlier graph.
feature_names (list of strings) – The display names of all columns of the dataset, to show on the x-axis of the plot.
- Returns
Plot – The dimensional outlier graph for data point with index ind.
- Return type
matplotlib plot
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods. :param X: The input samples. :type X: numpy array of shape (n_samples, n_features) :param y: Not used, present for API consistency by convention. :type y: Ignored
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.deep_svdd module¶
Deep One-Class Classification for outlier detection
- class pyod.models.deep_svdd.DeepSVDD(c=None, use_ae=False, hidden_neurons=None, hidden_activation='relu', output_activation='sigmoid', optimizer='adam', epochs=100, batch_size=32, dropout_rate=0.2, l2_regularizer=0.1, validation_size=0.1, preprocessing=True, verbose=1, random_state=None, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Deep One-Class Classifier with AutoEncoder (AE) is a type of neural networks for learning useful data representations in an unsupervised way. DeepSVDD trains a neural network while minimizing the volume of a hypersphere that encloses the network representations of the data, forcing the network to extract the common factors of variation. Similar to PCA, DeepSVDD could be used to detect outlying objects in the data by calculating the distance from center See [BRVG+18] for details.
- Parameters
c (float, optional (default='forwad_nn_pass')) – Deep SVDD center, the default will be calculated based on network initialization first forward pass. To get repeated results set random_state if c is set to None.
use_ae (bool, optional (default=False)) – The AutoEncoder type of DeepSVDD it reverse neurons from hidden_neurons if set to True.
hidden_neurons (list, optional (default=[64, 32])) – The number of neurons per hidden layers. if use_ae is True, neurons will be reversed eg. [64, 32] -> [64, 32, 32, 64, n_features]
hidden_activation (str, optional (default='relu')) – Activation function to use for hidden layers. All hidden layers are forced to use the same type of activation. See https://keras.io/activations/
output_activation (str, optional (default='sigmoid')) – Activation function to use for output layer. See https://keras.io/activations/
optimizer (str, optional (default='adam')) – String (name of optimizer) or optimizer instance. See https://keras.io/optimizers/
epochs (int, optional (default=100)) – Number of epochs to train the model.
batch_size (int, optional (default=32)) – Number of samples per gradient update.
dropout_rate (float in (0., 1), optional (default=0.2)) – The dropout to be used across all layers.
l2_regularizer (float in (0., 1), optional (default=0.1)) – The regularization strength of activity_regularizer applied on each layer. By default, l2 regularizer is used. See https://keras.io/regularizers/
validation_size (float in (0., 1), optional (default=0.1)) – The percentage of data to be used for validation.
preprocessing (bool, optional (default=True)) – If True, apply standardization on the data.
verbose (int, optional (default=1)) –
Verbosity mode.
0 = silent
1 = progress bar
2 = one line per epoch.
For verbose >= 1, model summary may be printed.
random_state (random_state: int, RandomState instance or None, optional) – (default=None) If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the decision function.
- model_¶
The underlying DeppSVDD in Keras.
- Type
Keras Object
- history_¶
The AutoEncoder training history.
- Type
Keras Object
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.feature_bagging module¶
Feature bagging detector
- class pyod.models.feature_bagging.FeatureBagging(base_estimator=None, n_estimators=10, contamination=0.1, max_features=1.0, bootstrap_features=False, check_detector=True, check_estimator=False, n_jobs=1, random_state=None, combination='average', verbose=0, estimator_params=None)[source]¶
Bases:
pyod.models.base.BaseDetector
A feature bagging detector is a meta estimator that fits a number of base detectors on various sub-samples of the dataset and use averaging or other combination methods to improve the predictive accuracy and control over-fitting.
The sub-sample size is always the same as the original input sample size but the features are randomly sampled from half of the features to all features.
By default, LOF is used as the base estimator. However, any estimator could be used as the base estimator, such as kNN and ABOD.
Feature bagging first construct n subsamples by random selecting a subset of features, which induces the diversity of base estimators.
Finally, the prediction score is generated by averaging/taking the maximum of all base detectors. See [BLK05] for details.
- Parameters
base_estimator (object or None, optional (default=None)) – The base estimator to fit on random subsets of the dataset. If None, then the base estimator is a LOF detector.
n_estimators (int, optional (default=10)) – The number of base estimators in the ensemble.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
max_features (int or float, optional (default=1.0)) –
The number of features to draw from X to train each base estimator.
If int, then draw max_features features.
If float, then draw max_features * X.shape[1] features.
bootstrap_features (bool, optional (default=False)) – Whether features are drawn with replacement.
check_detector (bool, optional (default=True)) – If set to True, check whether the base estimator is consistent with pyod standard.
check_estimator (bool, optional (default=False)) –
If set to True, check whether the base estimator is consistent with sklearn standard.
Deprecated since version 0.6.9: check_estimator will be removed in pyod 0.8.0.; it will be replaced by check_detector.
n_jobs (optional (default=1)) – The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the number of cores.
random_state (int, RandomState or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
combination (str, optional (default='average')) –
The method of combination:
if ‘average’: take the average of all detectors
if ‘max’: take the maximum scores of all detectors
verbose (int, optional (default=0)) – Controls the verbosity of the building process.
estimator_params (dict, optional (default=None)) – The list of attributes to use as parameters when instantiating a new base estimator. If none are given, default parameters are used.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.hbos module¶
Histogram-based Outlier Detection (HBOS)
- class pyod.models.hbos.HBOS(n_bins=10, alpha=0.1, tol=0.5, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Histogram- based outlier detection (HBOS) is an efficient unsupervised method. It assumes the feature independence and calculates the degree of outlyingness by building histograms. See [BGD12] for details.
- Parameters
n_bins (int, optional (default=10)) – The number of bins.
alpha (float in (0, 1), optional (default=0.1)) – The regularizer for preventing overflow.
tol (float in (0, 1), optional (default=0.5)) – The parameter to decide the flexibility while dealing the samples falling outside the bins.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
- bin_edges_¶
The edges of the bins.
- Type
numpy array of shape (n_bins + 1, n_features )
- hist_¶
The density of each histogram.
- Type
numpy array of shape (n_bins, n_features)
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.iforest module¶
IsolationForest Outlier Detector. Implemented on scikit-learn library.
- class pyod.models.iforest.IForest(n_estimators=100, max_samples='auto', contamination=0.1, max_features=1.0, bootstrap=False, n_jobs=1, behaviour='old', random_state=None, verbose=0)[source]¶
Bases:
pyod.models.base.BaseDetector
Wrapper of scikit-learn Isolation Forest with more functionalities.
The IsolationForest ‘isolates’ observations by randomly selecting a feature and then randomly selecting a split value between the maximum and minimum values of the selected feature. See [BLTZ08, BLTZ12] for details.
Since recursive partitioning can be represented by a tree structure, the number of splittings required to isolate a sample is equivalent to the path length from the root node to the terminating node.
This path length, averaged over a forest of such random trees, is a measure of normality and our decision function.
Random partitioning produces noticeably shorter paths for anomalies. Hence, when a forest of random trees collectively produce shorter path lengths for particular samples, they are highly likely to be anomalies.
- Parameters
n_estimators (int, optional (default=100)) – The number of base estimators in the ensemble.
max_samples (int or float, optional (default="auto")) –
The number of samples to draw from X to train each base estimator.
If int, then draw max_samples samples.
If float, then draw max_samples * X.shape[0] samples.
If “auto”, then max_samples=min(256, n_samples).
If max_samples is larger than the number of samples provided, all samples will be used for all trees (no sampling).
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
max_features (int or float, optional (default=1.0)) –
The number of features to draw from X to train each base estimator.
If int, then draw max_features features.
If float, then draw max_features * X.shape[1] features.
bootstrap (bool, optional (default=False)) – If True, individual trees are fit on random subsets of the training data sampled with replacement. If False, sampling without replacement is performed.
n_jobs (integer, optional (default=1)) – The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the number of cores.
behaviour (str, default='old') –
Behaviour of the
decision_function
which can be either ‘old’ or ‘new’. Passingbehaviour='new'
makes thedecision_function
change to match other anomaly detection algorithm API which will be the default behaviour in the future. As explained in details in theoffset_
attribute documentation, thedecision_function
becomes dependent on the contamination parameter, in such a way that 0 becomes its natural threshold to detect outliers.New in version 0.7.0:
behaviour
is added in 0.7.0 for back-compatibility purpose.Deprecated since version 0.20:
behaviour='old'
is deprecated in sklearn 0.20 and will not be possible in 0.22.Deprecated since version 0.22:
behaviour
parameter will be deprecated in sklearn 0.22 and removed in 0.24.Warning
Only applicable for sklearn 0.20 above.
random_state (int, RandomState instance or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
verbose (int, optional (default=0)) – Controls the verbosity of the tree building process.
- estimators_¶
The collection of fitted sub-estimators.
- Type
list of DecisionTreeClassifier
- estimators_samples_¶
The subset of drawn samples (i.e., the in-bag samples) for each base estimator.
- Type
list of arrays
- max_samples_¶
The actual number of samples
- Type
integer
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.knn module¶
k-Nearest Neighbors Detector (kNN)
- class pyod.models.knn.KNN(contamination=0.1, n_neighbors=5, method='largest', radius=1.0, algorithm='auto', leaf_size=30, metric='minkowski', p=2, metric_params=None, n_jobs=1, **kwargs)[source]¶
Bases:
pyod.models.base.BaseDetector
kNN class for outlier detection. For an observation, its distance to its kth nearest neighbor could be viewed as the outlying score. It could be viewed as a way to measure the density. See [BAP02, BRRS00] for details.
Three kNN detectors are supported: largest: use the distance to the kth neighbor as the outlier score mean: use the average of all k neighbors as the outlier score median: use the median of the distance to k neighbors as the outlier score
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_neighbors (int, optional (default = 5)) – Number of neighbors to use by default for k neighbors queries.
method (str, optional (default='largest')) –
{‘largest’, ‘mean’, ‘median’}
’largest’: use the distance to the kth neighbor as the outlier score
’mean’: use the average of all k neighbors as the outlier score
’median’: use the median of the distance to k neighbors as the outlier score
radius (float, optional (default = 1.0)) – Range of parameter space to use by default for radius_neighbors queries.
algorithm ({'auto', 'ball_tree', 'kd_tree', 'brute'}, optional) –
Algorithm used to compute the nearest neighbors:
’ball_tree’ will use BallTree
’kd_tree’ will use KDTree
’brute’ will use a brute-force search.
’auto’ will attempt to decide the most appropriate algorithm based on the values passed to
fit()
method.
Note: fitting on sparse input will override the setting of this parameter, using brute force.
Deprecated since version 0.74:
algorithm
is deprecated in PyOD 0.7.4 and will not be possible in 0.7.6. It has to use BallTree for consistency.leaf_size (int, optional (default = 30)) – Leaf size passed to BallTree. This can affect the speed of the construction and query, as well as the memory required to store the tree. The optimal value depends on the nature of the problem.
metric (string or callable, default 'minkowski') –
metric to use for distance computation. Any metric from scikit-learn or scipy.spatial.distance can be used.
If metric is a callable function, it is called on each pair of instances (rows) and the resulting value recorded. The callable should take two arrays as input and return one value indicating the distance between them. This works for Scipy’s metrics, but is less efficient than passing the metric name as a string.
Distance matrices are not supported.
Valid values for metric are:
from scikit-learn: [‘cityblock’, ‘cosine’, ‘euclidean’, ‘l1’, ‘l2’, ‘manhattan’]
from scipy.spatial.distance: [‘braycurtis’, ‘canberra’, ‘chebyshev’, ‘correlation’, ‘dice’, ‘hamming’, ‘jaccard’, ‘kulsinski’, ‘mahalanobis’, ‘matching’, ‘minkowski’, ‘rogerstanimoto’, ‘russellrao’, ‘seuclidean’, ‘sokalmichener’, ‘sokalsneath’, ‘sqeuclidean’, ‘yule’]
See the documentation for scipy.spatial.distance for details on these metrics.
p (integer, optional (default = 2)) – Parameter for the Minkowski metric from sklearn.metrics.pairwise.pairwise_distances. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used. See http://scikit-learn.org/stable/modules/generated/sklearn.metrics.pairwise.pairwise_distances
metric_params (dict, optional (default = None)) – Additional keyword arguments for the metric function.
n_jobs (int, optional (default = 1)) – The number of parallel jobs to run for neighbors search. If
-1
, then the number of jobs is set to the number of CPU cores. Affects only kneighbors and kneighbors_graph methods.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.lmdd module¶
Linear Model Deviation-base outlier detection (LMDD).
- class pyod.models.lmdd.LMDD(contamination=0.1, n_iter=50, dis_measure='aad', random_state=None)[source]¶
Bases:
pyod.models.base.BaseDetector
Linear Method for Deviation-based Outlier Detection.
LMDD employs the concept of the smoothing factor which indicates how much the dissimilarity can be reduced by removing a subset of elements from the data-set. Read more in the [BAAR96].
Note: this implementation has minor modification to make it output scores instead of labels.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_iter (int, optional (default=50)) – Number of iterations where in each iteration, the process is repeated after randomizing the order of the input. Note that n_iter is a very important factor that affects the accuracy. The higher the better the accuracy and the longer the execution.
dis_measure (str, optional (default='aad')) –
Dissimilarity measure to be used in calculating the smoothing factor for points, options available:
’aad’: Average Absolute Deviation
’var’: Variance
’iqr’: Interquartile Range
random_state (int, RandomState instance or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.loda module¶
Loda: Lightweight on-line detector of anomalies Adapted from tilitools (https://github.com/nicococo/tilitools) by
- class pyod.models.loda.LODA(contamination=0.1, n_bins=10, n_random_cuts=100)[source]¶
Bases:
pyod.models.base.BaseDetector
Loda: Lightweight on-line detector of anomalies. See [BPevny16] for more information.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_bins (int, optional (default = 10)) – The number of bins for the histogram.
n_random_cuts (int, optional (default = 100)) – The number of random cuts.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.lof module¶
Local Outlier Factor (LOF). Implemented on scikit-learn library.
- class pyod.models.lof.LOF(n_neighbors=20, algorithm='auto', leaf_size=30, metric='minkowski', p=2, metric_params=None, contamination=0.1, n_jobs=1, novelty=False)[source]¶
Bases:
pyod.models.base.BaseDetector
Wrapper of scikit-learn LOF Class with more functionalities. Unsupervised Outlier Detection using Local Outlier Factor (LOF).
The anomaly score of each sample is called Local Outlier Factor. It measures the local deviation of density of a given sample with respect to its neighbors. It is local in that the anomaly score depends on how isolated the object is with respect to the surrounding neighborhood. More precisely, locality is given by k-nearest neighbors, whose distance is used to estimate the local density. By comparing the local density of a sample to the local densities of its neighbors, one can identify samples that have a substantially lower density than their neighbors. These are considered outliers. See [BBKNS00] for details.
- Parameters
n_neighbors (int, optional (default=20)) – Number of neighbors to use by default for kneighbors queries. If n_neighbors is larger than the number of samples provided, all samples will be used.
algorithm ({'auto', 'ball_tree', 'kd_tree', 'brute'}, optional) –
Algorithm used to compute the nearest neighbors:
’ball_tree’ will use BallTree
’kd_tree’ will use KDTree
’brute’ will use a brute-force search.
’auto’ will attempt to decide the most appropriate algorithm based on the values passed to
fit()
method.
Note: fitting on sparse input will override the setting of this parameter, using brute force.
leaf_size (int, optional (default=30)) – Leaf size passed to BallTree or KDTree. This can affect the speed of the construction and query, as well as the memory required to store the tree. The optimal value depends on the nature of the problem.
metric (string or callable, default 'minkowski') –
metric used for the distance computation. Any metric from scikit-learn or scipy.spatial.distance can be used.
If ‘precomputed’, the training input X is expected to be a distance matrix.
If metric is a callable function, it is called on each pair of instances (rows) and the resulting value recorded. The callable should take two arrays as input and return one value indicating the distance between them. This works for Scipy’s metrics, but is less efficient than passing the metric name as a string.
Valid values for metric are:
from scikit-learn: [‘cityblock’, ‘cosine’, ‘euclidean’, ‘l1’, ‘l2’, ‘manhattan’]
from scipy.spatial.distance: [‘braycurtis’, ‘canberra’, ‘chebyshev’, ‘correlation’, ‘dice’, ‘hamming’, ‘jaccard’, ‘kulsinski’, ‘mahalanobis’, ‘matching’, ‘minkowski’, ‘rogerstanimoto’, ‘russellrao’, ‘seuclidean’, ‘sokalmichener’, ‘sokalsneath’, ‘sqeuclidean’, ‘yule’]
See the documentation for scipy.spatial.distance for details on these metrics: http://docs.scipy.org/doc/scipy/reference/spatial.distance.html
p (integer, optional (default = 2)) – Parameter for the Minkowski metric from sklearn.metrics.pairwise.pairwise_distances. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used. See http://scikit-learn.org/stable/modules/generated/sklearn.metrics.pairwise.pairwise_distances
metric_params (dict, optional (default = None)) – Additional keyword arguments for the metric function.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the decision function.
n_jobs (int, optional (default = 1)) – The number of parallel jobs to run for neighbors search. If
-1
, then the number of jobs is set to the number of CPU cores. Affects only kneighbors and kneighbors_graph methods.novelty (bool (default=False)) – By default, LocalOutlierFactor is only meant to be used for outlier detection (novelty=False). Set novelty to True if you want to use LocalOutlierFactor for novelty detection. In this case be aware that that you should only use predict, decision_function and score_samples on new unseen data and not on the training set.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.loci module¶
Local Correlation Integral (LOCI). Part of the codes are adapted from https://github.com/Cloudy10/loci
- class pyod.models.loci.LOCI(contamination=0.1, alpha=0.5, k=3)[source]¶
Bases:
pyod.models.base.BaseDetector
Local Correlation Integral.
LOCI is highly effective for detecting outliers and groups of outliers ( a.k.a.micro-clusters), which offers the following advantages and novelties: (a) It provides an automatic, data-dictated cut-off to determine whether a point is an outlier—in contrast, previous methods force users to pick cut-offs, without any hints as to what cut-off value is best for a given dataset. (b) It can provide a LOCI plot for each point; this plot summarizes a wealth of information about the data in the vicinity of the point, determining clusters, micro-clusters, their diameters and their inter-cluster distances. None of the existing outlier-detection methods can match this feature, because they output only a single number for each point: its outlierness score.(c) It can be computed as quickly as the best previous methods Read more in the [BPKGF03].
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
alpha (int, default = 0.5) – The neighbourhood parameter measures how large of a neighbourhood should be considered “local”.
k (int, default = 3) – An outlier cutoff threshold for determine whether or not a point should be considered an outlier.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
Examples
>>> from pyod.models.loci import LOCI >>> from pyod.utils.data import generate_data >>> n_train = 50 >>> n_test = 50 >>> contamination = 0.1 >>> X_train, y_train, X_test, y_test = generate_data( ... n_train=n_train, n_test=n_test, ... contamination=contamination, random_state=42) >>> clf = LOCI() >>> clf.fit(X_train) LOCI(alpha=0.5, contamination=0.1, k=None)
- decision_function(X)[source]¶
Predict raw anomaly scores of X using the fitted detector.
The anomaly score of an input sample is computed based on the fitted detector. For consistency, outliers are assigned with higher anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit the model using X as training data.
- Parameters
X (array, shape (n_samples, n_features)) – Training data.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.lscp module¶
Locally Selective Combination of Parallel Outlier Ensembles (LSCP). Adapted from the original implementation.
- class pyod.models.lscp.LSCP(detector_list, local_region_size=30, local_max_features=1.0, n_bins=10, random_state=None, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Locally Selection Combination in Parallel Outlier Ensembles
LSCP is an unsupervised parallel outlier detection ensemble which selects competent detectors in the local region of a test instance. This implementation uses an Average of Maximum strategy. First, a heterogeneous list of base detectors is fit to the training data and then generates a pseudo ground truth for each train instance is generated by taking the maximum outlier score.
For each test instance: 1) The local region is defined to be the set of nearest training points in randomly sampled feature subspaces which occur more frequently than a defined threshold over multiple iterations.
2) Using the local region, a local pseudo ground truth is defined and the pearson correlation is calculated between each base detector’s training outlier scores and the pseudo ground truth.
3) A histogram is built out of pearson correlation scores; detectors in the largest bin are selected as competent base detectors for the given test instance.
4) The average outlier score of the selected competent detectors is taken to be the final score.
See [BZNHL19] for details.
- Parameters
detector_list (List, length must be greater than 1) – Base unsupervised outlier detectors from PyOD. (Note: requires fit and decision_function methods)
local_region_size (int, optional (default=30)) – Number of training points to consider in each iteration of the local region generation process (30 by default).
local_max_features (float in (0.5, 1.), optional (default=1.0)) – Maximum proportion of number of features to consider when defining the local region (1.0 by default).
n_bins (int, optional (default=10)) – Number of bins to use when selecting the local region
random_state (RandomState, optional (default=None)) – A random number generator instance to define the state of the random permutations generator.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function (0.1 by default).
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
Examples
>>> from pyod.utils.data import generate_data >>> from pyod.utils.utility import standardizer >>> from pyod.models.lscp import LSCP >>> from pyod.models.lof import LOF >>> X_train, y_train, X_test, y_test = generate_data( ... n_train=50, n_test=50, ... contamination=0.1, random_state=42) >>> X_train, X_test = standardizer(X_train, X_test) >>> detector_list = [LOF(), LOF()] >>> clf = LSCP(detector_list) >>> clf.fit(X_train) LSCP(...)
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.mad module¶
Median Absolute deviation (MAD)Algorithm. Strictly for Univariate Data.
- class pyod.models.mad.MAD(threshold=3.5)[source]¶
Bases:
pyod.models.base.BaseDetector
Median Absolute Deviation: for measuring the distances between data points and the median in terms of median distance. See [BIH93] for details.
- Parameters
threshold (float, optional (default=3.5)) – The modified z-score to use as a threshold. Observations with a modified z-score (based on the median absolute deviation) greater than this value will be classified as outliers.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The modified z-score to use as a threshold. Observations with a modified z-score (based on the median absolute deviation) greater than this value will be classified as outliers.
- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector. The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator. Note that n_features must equal 1.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples. Note that n_features must equal 1.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.mcd module¶
Outlier Detection with Minimum Covariance Determinant (MCD)
- class pyod.models.mcd.MCD(contamination=0.1, store_precision=True, assume_centered=False, support_fraction=None, random_state=None)[source]¶
Bases:
pyod.models.base.BaseDetector
Detecting outliers in a Gaussian distributed dataset using Minimum Covariance Determinant (MCD): robust estimator of covariance.
The Minimum Covariance Determinant covariance estimator is to be applied on Gaussian-distributed data, but could still be relevant on data drawn from a unimodal, symmetric distribution. It is not meant to be used with multi-modal data (the algorithm used to fit a MinCovDet object is likely to fail in such a case). One should consider projection pursuit methods to deal with multi-modal datasets.
First fit a minimum covariance determinant model and then compute the Mahalanobis distance as the outlier degree of the data
See [BHR04, BRD99] for details.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
store_precision (bool) – Specify if the estimated precision is stored.
assume_centered (bool) – If True, the support of the robust location and the covariance estimates is computed, and a covariance estimate is recomputed from it, without centering the data. Useful to work with data whose mean is significantly equal to zero but is not exactly zero. If False, the robust location and covariance are directly computed with the FastMCD algorithm without additional treatment.
support_fraction (float, 0 < support_fraction < 1) – The proportion of points to be included in the support of the raw MCD estimate. Default is None, which implies that the minimum value of support_fraction will be used within the algorithm: [n_sample + n_features + 1] / 2
random_state (int, RandomState instance or None, optional (default=None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
- raw_location_¶
The raw robust estimated location before correction and re-weighting.
- Type
array-like, shape (n_features,)
- raw_covariance_¶
The raw robust estimated covariance before correction and re-weighting.
- Type
array-like, shape (n_features, n_features)
- raw_support_¶
A mask of the observations that have been used to compute the raw robust estimates of location and shape, before correction and re-weighting.
- Type
array-like, shape (n_samples,)
- location_¶
Estimated robust location
- Type
array-like, shape (n_features,)
- covariance_¶
Estimated robust covariance matrix
- Type
array-like, shape (n_features, n_features)
- precision_¶
Estimated pseudo inverse matrix. (stored only if store_precision is True)
- Type
array-like, shape (n_features, n_features)
- support_¶
A mask of the observations that have been used to compute the robust estimates of location and shape.
- Type
array-like, shape (n_samples,)
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted. Mahalanobis distances of the training set (on which :meth:`fit is called) observations.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.mo_gaal module¶
Multiple-Objective Generative Adversarial Active Learning. Part of the codes are adapted from https://github.com/leibinghe/GAAL-based-outlier-detection
- class pyod.models.mo_gaal.MO_GAAL(k=10, stop_epochs=20, lr_d=0.01, lr_g=0.0001, decay=1e-06, momentum=0.9, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Multi-Objective Generative Adversarial Active Learning.
MO_GAAL directly generates informative potential outliers to assist the classifier in describing a boundary that can separate outliers from normal data effectively. Moreover, to prevent the generator from falling into the mode collapsing problem, the network structure of SO-GAAL is expanded from a single generator (SO-GAAL) to multiple generators with different objectives (MO-GAAL) to generate a reasonable reference distribution for the whole dataset. Read more in the [BLLZ+19].
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
k (int, optional (default=10)) – The number of sub generators.
stop_epochs (int, optional (default=20)) – The number of epochs of training.
lr_d (float, optional (default=0.01)) – The learn rate of the discriminator.
lr_g (float, optional (default=0.0001)) – The learn rate of the generator.
decay (float, optional (default=1e-6)) – The decay parameter for SGD.
momentum (float, optional (default=0.9)) – The momentum parameter for SGD.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.ocsvm module¶
One-class SVM detector. Implemented on scikit-learn library.
- class pyod.models.ocsvm.OCSVM(kernel='rbf', degree=3, gamma='auto', coef0=0.0, tol=0.001, nu=0.5, shrinking=True, cache_size=200, verbose=False, max_iter=- 1, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Wrapper of scikit-learn one-class SVM Class with more functionalities. Unsupervised Outlier Detection.
Estimate the support of a high-dimensional distribution.
The implementation is based on libsvm. See http://scikit-learn.org/stable/modules/svm.html#svm-outlier-detection and [BScholkopfPST+01].
- Parameters
kernel (string, optional (default='rbf')) – Specifies the kernel type to be used in the algorithm. It must be one of ‘linear’, ‘poly’, ‘rbf’, ‘sigmoid’, ‘precomputed’ or a callable. If none is given, ‘rbf’ will be used. If a callable is given it is used to precompute the kernel matrix.
nu (float, optional) – An upper bound on the fraction of training errors and a lower bound of the fraction of support vectors. Should be in the interval (0, 1]. By default 0.5 will be taken.
degree (int, optional (default=3)) – Degree of the polynomial kernel function (‘poly’). Ignored by all other kernels.
gamma (float, optional (default='auto')) – Kernel coefficient for ‘rbf’, ‘poly’ and ‘sigmoid’. If gamma is ‘auto’ then 1/n_features will be used instead.
coef0 (float, optional (default=0.0)) – Independent term in kernel function. It is only significant in ‘poly’ and ‘sigmoid’.
tol (float, optional) – Tolerance for stopping criterion.
shrinking (bool, optional) – Whether to use the shrinking heuristic.
cache_size (float, optional) – Specify the size of the kernel cache (in MB).
verbose (bool, default: False) – Enable verbose output. Note that this setting takes advantage of a per-process runtime setting in libsvm that, if enabled, may not work properly in a multithreaded context.
max_iter (int, optional (default=-1)) – Hard limit on iterations within solver, or -1 for no limit.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
- support_¶
Indices of support vectors.
- Type
array-like, shape = [n_SV]
- support_vectors_¶
Support vectors.
- Type
array-like, shape = [nSV, n_features]
- dual_coef_¶
Coefficients of the support vectors in the decision function.
- Type
array, shape = [1, n_SV]
- coef_¶
Weights assigned to the features (coefficients in the primal problem). This is only available in the case of a linear kernel.
coef_ is readonly property derived from dual_coef_ and support_vectors_
- Type
array, shape = [1, n_features]
- intercept_¶
Constant in the decision function.
- Type
array, shape = [1,]
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None, sample_weight=None, **params)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
sample_weight (array-like, shape (n_samples,)) – Per-sample weights. Rescale C per sample. Higher weights force the classifier to put more emphasis on these points.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.pca module¶
Principal Component Analysis (PCA) Outlier Detector
- class pyod.models.pca.PCA(n_components=None, n_selected_components=None, contamination=0.1, copy=True, whiten=False, svd_solver='auto', tol=0.0, iterated_power='auto', random_state=None, weighted=True, standardization=True)[source]¶
Bases:
pyod.models.base.BaseDetector
Principal component analysis (PCA) can be used in detecting outliers. PCA is a linear dimensionality reduction using Singular Value Decomposition of the data to project it to a lower dimensional space.
In this procedure, covariance matrix of the data can be decomposed to orthogonal vectors, called eigenvectors, associated with eigenvalues. The eigenvectors with high eigenvalues capture most of the variance in the data.
Therefore, a low dimensional hyperplane constructed by k eigenvectors can capture most of the variance in the data. However, outliers are different from normal data points, which is more obvious on the hyperplane constructed by the eigenvectors with small eigenvalues.
Therefore, outlier scores can be obtained as the sum of the projected distance of a sample on all eigenvectors. See [BAgg15, BSCSC03] for details.
Score(X) = Sum of weighted euclidean distance between each sample to the hyperplane constructed by the selected eigenvectors
- Parameters
n_components (int, float, None or string) –
Number of components to keep. if n_components is not set all components are kept:
n_components == min(n_samples, n_features)
if n_components == ‘mle’ and svd_solver == ‘full’, Minka’s MLE is used to guess the dimension if
0 < n_components < 1
and svd_solver == ‘full’, select the number of components such that the amount of variance that needs to be explained is greater than the percentage specified by n_components n_components cannot be equal to n_features for svd_solver == ‘arpack’.n_selected_components (int, optional (default=None)) – Number of selected principal components for calculating the outlier scores. It is not necessarily equal to the total number of the principal components. If not set, use all principal components.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
copy (bool (default True)) – If False, data passed to fit are overwritten and running fit(X).transform(X) will not yield the expected results, use fit_transform(X) instead.
whiten (bool, optional (default False)) –
When True (False by default) the components_ vectors are multiplied by the square root of n_samples and then divided by the singular values to ensure uncorrelated outputs with unit component-wise variances.
Whitening will remove some information from the transformed signal (the relative variance scales of the components) but can sometime improve the predictive accuracy of the downstream estimators by making their data respect some hard-wired assumptions.
svd_solver (string {'auto', 'full', 'arpack', 'randomized'}) –
- auto :
the solver is selected by a default policy based on X.shape and n_components: if the input data is larger than 500x500 and the number of components to extract is lower than 80% of the smallest dimension of the data, then the more efficient ‘randomized’ method is enabled. Otherwise the exact full SVD is computed and optionally truncated afterwards.
- full :
run exact full SVD calling the standard LAPACK solver via scipy.linalg.svd and select the components by postprocessing
- arpack :
run SVD truncated to n_components calling ARPACK solver via scipy.sparse.linalg.svds. It requires strictly 0 < n_components < X.shape[1]
- randomized :
run randomized SVD by the method of Halko et al.
tol (float >= 0, optional (default .0)) – Tolerance for singular values computed by svd_solver == ‘arpack’.
iterated_power (int >= 0, or 'auto', (default 'auto')) – Number of iterations for the power method computed by svd_solver == ‘randomized’.
random_state (int, RandomState instance or None, optional (default None)) – If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random. Used when
svd_solver
== ‘arpack’ or ‘randomized’.weighted (bool, optional (default=True)) – If True, the eigenvalues are used in score computation. The eigenvectors with small eigenvalues comes with more importance in outlier score calculation.
standardization (bool, optional (default=True)) – If True, perform standardization first to convert data to zero mean and unit variance. See http://scikit-learn.org/stable/auto_examples/preprocessing/plot_scaling_importance.html
- components_¶
Principal axes in feature space, representing the directions of maximum variance in the data. The components are sorted by
explained_variance_
.- Type
array, shape (n_components, n_features)
- explained_variance_¶
The amount of variance explained by each of the selected components.
Equal to n_components largest eigenvalues of the covariance matrix of X.
- Type
array, shape (n_components,)
- explained_variance_ratio_¶
Percentage of variance explained by each of the selected components.
If
n_components
is not set then all components are stored and the sum of explained variances is equal to 1.0.- Type
array, shape (n_components,)
- singular_values_¶
The singular values corresponding to each of the selected components. The singular values are equal to the 2-norms of the
n_components
variables in the lower-dimensional space.- Type
array, shape (n_components,)
- mean_¶
Per-feature empirical mean, estimated from the training set.
Equal to X.mean(axis=0).
- Type
array, shape (n_features,)
- n_components_¶
The estimated number of components. When n_components is set to ‘mle’ or a number between 0 and 1 (with svd_solver == ‘full’) this number is estimated from input data. Otherwise it equals the parameter n_components, or n_features if n_components is None.
- Type
- noise_variance_¶
The estimated noise covariance following the Probabilistic PCA model from Tipping and Bishop 1999. See “Pattern Recognition and Machine Learning” by C. Bishop, 12.2.1 p. 574 or http://www.miketipping.com/papers/met-mppca.pdf. It is required to computed the estimated data covariance and score samples.
Equal to the average of (min(n_features, n_samples) - n_components) smallest eigenvalues of the covariance matrix of X.
- Type
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- property explained_variance_¶
The amount of variance explained by each of the selected components.
Equal to n_components largest eigenvalues of the covariance matrix of X.
Decorator for scikit-learn PCA attributes.
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- property noise_variance_¶
The estimated noise covariance following the Probabilistic PCA model from Tipping and Bishop 1999. See “Pattern Recognition and Machine Learning” by C. Bishop, 12.2.1 p. 574 or http://www.miketipping.com/papers/met-mppca.pdf. It is required to computed the estimated data covariance and score samples.
Equal to the average of (min(n_features, n_samples) - n_components) smallest eigenvalues of the covariance matrix of X.
Decorator for scikit-learn PCA attributes.
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.rod module¶
Rotation-based Outlier Detector (ROD)
- class pyod.models.rod.ROD(contamination=0.1, parallel_execution=False)[source]¶
Bases:
pyod.models.base.BaseDetector
Rotation-based Outlier Detection (ROD), is a robust and parameter-free algorithm that requires no statistical distribution assumptions and works intuitively in three-dimensional space, where the 3D-vectors, representing the data points, are rotated about the geometric median two times counterclockwise using Rodrigues rotation formula. The results of the rotation are parallelepipeds where their volumes are mathematically analyzed as cost functions and used to calculate the Median Absolute Deviations to obtain the outlying score. For high dimensions > 3, the overall score is calculated by taking the average of the overall 3D-subspaces scores, that were resulted from decomposing the original data space. See [BABC20] for details.
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
parallel_execution (bool, optional (default=False)) – If set to True, the algorithm will run in parallel, for a better execution time. It is recommended to set this parameter to True ONLY for high dimensional data > 10, and if a proper hardware is available.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
- pyod.models.rod.euclidean(v1, v2, c=False)[source]¶
Find the euclidean distance between two vectors or between a vector and a collection of vectors.
- pyod.models.rod.geometric_median(x, eps=1e-05)[source]¶
Find the multivariate geometric L1-median by applying Vardi and Zhang algorithm.
- Parameters
x (array-like, the data points) –
eps (float (default=1e-5), a threshold to indicate when to stop) –
- Returns
gm
- Return type
array, Geometric L1-median
- pyod.models.rod.mad(costs, median=None)[source]¶
Apply the robust median absolute deviation (MAD) to measure the inconsistency/variability of the rotation costs.
- pyod.models.rod.process_sub(subspace, gm, median, scaler1, scaler2)[source]¶
Apply ROD on a 3D subSpace then process it with sigmoid to compare apples to apples
- Parameters
- Returns
- Return type
ROD decision scores with sigmoid applied, gm, scaler1, scaler2
- pyod.models.rod.rod_3D(x, gm=None, median=None, scaler1=None, scaler2=None)[source]¶
Find ROD scores for 3D Data. note that gm, scaler1 and scaler2 will be returned “as they are” and without being changed if the model has been fit already
- Parameters
- Returns
- Return type
decision_scores, gm, scaler1, scaler2
- pyod.models.rod.rod_nD(X, parallel, gm=None, median=None, data_scaler=None, angles_scalers1=None, angles_scalers2=None)[source]¶
- Find ROD overall scores when Data is higher than 3D:
# scale dataset using Robust Scaler # decompose the full space into a combinations of 3D subspaces, # Apply ROD on each combination, # squish scores per subspace, so we compare apples to apples, # calculate average of ROD scores of all subspaces per observation.
Note that if gm, data_scaler, angles_scalers1, angles_scalers2 are None, that means it is a fit() process and they will be calculated and returned to the class to be saved for future prediction. Otherwise, if they are not None, then it is a prediction process.
- Parameters
X (array-like, data points) –
parallel (bool, True runs the algorithm in parallel) –
gm (list (default=None), the geometric median) –
median (list (default=None), MAD medians) –
data_scaler (obj (default=None), RobustScaler of data) –
angles_scalers1 (list (default=None), MinMaxScalers of Angles group 1) –
angles_scalers2 (list (default=None), MinMaxScalers of Angles group 2) –
- Returns
- Return type
ROD decision scores, gm, median, data_scaler, angles_scalers1, angles_scalers2
- pyod.models.rod.scale_angles(gammas, scaler1=None, scaler2=None)[source]¶
Scale all angles in which angles <= 90 degree will be scaled within [0 - 54.7] and angles > 90 will be scaled within [90 - 126]
- Parameters
gammas (list, angles) –
scaler1 (obj (default=None), MinMaxScaler of Angles group 1) –
scaler2 (obj (default=None), MinMaxScaler of Angles group 2) –
- Returns
- Return type
scaled angles, scaler1, scaler2
pyod.models.sod module¶
Subspace Outlier Detection (SOD)
- class pyod.models.sod.SOD(contamination=0.1, n_neighbors=20, ref_set=10, alpha=0.8)[source]¶
Bases:
pyod.models.base.BaseDetector
Subspace outlier detection (SOD) schema aims to detect outlier in varying subspaces of a high dimensional feature space. For each data object, SOD explores the axis-parallel subspace spanned by the data object’s neighbors and determines how much the object deviates from the neighbors in this subspace.
See [BKKrogerSZ09] for details.
- Parameters
n_neighbors (int, optional (default=20)) – Number of neighbors to use by default for k neighbors queries.
ref_set (int, optional (default=10)) – specifies the number of shared nearest neighbors to create the reference set. Note that ref_set must be smaller than n_neighbors.
alpha (float in (0., 1.), optional (default=0.8)) – specifies the lower limit for selecting subspace. 0.8 is set as default as suggested in the original paper.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector. The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.so_gaal module¶
Single-Objective Generative Adversarial Active Learning. Part of the codes are adapted from https://github.com/leibinghe/GAAL-based-outlier-detection
- class pyod.models.so_gaal.SO_GAAL(stop_epochs=20, lr_d=0.01, lr_g=0.0001, decay=1e-06, momentum=0.9, contamination=0.1)[source]¶
Bases:
pyod.models.base.BaseDetector
Single-Objective Generative Adversarial Active Learning.
SO-GAAL directly generates informative potential outliers to assist the classifier in describing a boundary that can separate outliers from normal data effectively. Moreover, to prevent the generator from falling into the mode collapsing problem, the network structure of SO-GAAL is expanded from a single generator (SO-GAAL) to multiple generators with different objectives (MO-GAAL) to generate a reasonable reference distribution for the whole dataset. Read more in the [BLLZ+19].
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
stop_epochs (int, optional (default=20)) – The number of epochs of training.
lr_d (float, optional (default=0.01)) – The learn rate of the discriminator.
lr_g (float, optional (default=0.0001)) – The learn rate of the generator.
decay (float, optional (default=1e-6)) – The decay parameter for SGD.
momentum (float, optional (default=0.9)) – The momentum parameter for SGD.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.sos module¶
Stochastic Outlier Selection (SOS). Part of the codes are adapted from https://github.com/jeroenjanssens/scikit-sos
- class pyod.models.sos.SOS(contamination=0.1, perplexity=4.5, metric='euclidean', eps=1e-05)[source]¶
Bases:
pyod.models.base.BaseDetector
Stochastic Outlier Selection.
SOS employs the concept of affinity to quantify the relationship from one data point to another data point. Affinity is proportional to the similarity between two data points. So, a data point has little affinity with a dissimilar data point. A data point is selected as an outlier when all the other data points have insufficient affinity with it. Read more in the [BJHuszarPvdH12].
- Parameters
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
perplexity (float, optional (default=4.5)) – A smooth measure of the effective number of neighbours. The perplexity parameter is similar to the parameter k in kNN algorithm (the number of nearest neighbors). The range of perplexity can be any real number between 1 and n-1, where n is the number of samples.
metric (str, default 'euclidean') –
Metric used for the distance computation. Any metric from scipy.spatial.distance can be used.
Valid values for metric are:
’euclidean’
from scipy.spatial.distance: [‘braycurtis’, ‘canberra’, ‘chebyshev’, ‘correlation’, ‘dice’, ‘hamming’, ‘jaccard’, ‘kulsinski’, ‘mahalanobis’, ‘matching’, ‘minkowski’, ‘rogerstanimoto’, ‘russellrao’, ‘seuclidean’, ‘sokalmichener’, ‘sokalsneath’, ‘sqeuclidean’, ‘yule’]
See the documentation for scipy.spatial.distance for details on these metrics: http://docs.scipy.org/doc/scipy/reference/spatial.distance.html
eps (float, optional (default = 1e-5)) – Tolerance threshold for floating point errors.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
Examples
>>> from pyod.models.sos import SOS >>> from pyod.utils.data import generate_data >>> n_train = 50 >>> n_test = 50 >>> contamination = 0.1 >>> X_train, y_train, X_test, y_test = generate_data( ... n_train=n_train, n_test=n_test, ... contamination=contamination, random_state=42) >>> >>> clf = SOS() >>> clf.fit(X_train) SOS(contamination=0.1, eps=1e-05, metric='euclidean', perplexity=4.5)
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.suod module¶
SUOD
- class pyod.models.suod.SUOD(base_estimators=None, contamination=0.1, combination='average', n_jobs=None, rp_clf_list=None, rp_ng_clf_list=None, rp_flag_global=True, target_dim_frac=0.5, jl_method='basic', bps_flag=True, approx_clf_list=None, approx_ng_clf_list=None, approx_flag_global=True, approx_clf=None, cost_forecast_loc_fit=None, cost_forecast_loc_pred=None, verbose=False)[source]¶
Bases:
pyod.models.base.BaseDetector
SUOD (Scalable Unsupervised Outlier Detection) is an acceleration framework for large scale unsupervised outlier detector training and prediction. See [BZHC+21] for details.
- Parameters
base_estimators (list, length must be greater than 1) – A list of base estimators. Certain methods must be present, e.g., fit and predict.
combination (str, optional (default='average')) –
Decide how to aggregate the results from multiple models:
”average” : average the results from all base detectors
”maximization” : output the max value across all base detectors
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. Used when fitting to define the threshold on the decision function.
n_jobs (optional (default=1)) – The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the the number of jobs that can actually run in parallel.
rp_clf_list (list, optional (default=None)) – The list of outlier detection models to use random projection. The detector name should be consistent with PyOD.
rp_ng_clf_list (list, optional (default=None)) – The list of outlier detection models NOT to use random projection. The detector name should be consistent with PyOD.
rp_flag_global (bool, optional (default=True)) – If set to False, random projection is turned off for all base models.
target_dim_frac (float in (0., 1), optional (default=0.5)) – The target compression ratio.
jl_method (string, optional (default = 'basic')) –
The JL projection method:
”basic”: each component of the transformation matrix is taken at random in N(0,1).
”discrete”, each component of the transformation matrix is taken at random in {-1,1}.
”circulant”: the first row of the transformation matrix is taken at random in N(0,1), and each row is obtained from the previous one by a one-left shift.
”toeplitz”: the first row and column of the transformation matrix is taken at random in N(0,1), and each diagonal has a constant value taken from these first vector.
bps_flag (bool, optional (default=True)) – If set to False, balanced parallel scheduling is turned off.
approx_clf_list (list, optional (default=None)) – The list of outlier detection models to use pseudo-supervised approximation. The detector name should be consistent with PyOD.
approx_ng_clf_list (list, optional (default=None)) – The list of outlier detection models NOT to use pseudo-supervised approximation. The detector name should be consistent with PyOD.
approx_flag_global (bool, optional (default=True)) – If set to False, pseudo-supervised approximation is turned off.
approx_clf (object, optional (default: sklearn RandomForestRegressor)) – The supervised model used to approximate unsupervised models.
cost_forecast_loc_fit (str, optional) – The location of the pretrained cost prediction forecast for training.
cost_forecast_loc_pred (str, optional) – The location of the pretrained cost prediction forecast for prediction.
verbose (int, optional (default=0)) – Controls the verbosity of the building process.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detectors.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is ignored in unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
- Returns
self – Fitted estimator.
- Return type
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.vae module¶
Variational Auto Encoder (VAE) and beta-VAE for Unsupervised Outlier Detection
- Reference:
[BKW13] Kingma, Diederik, Welling ‘Auto-Encodeing Variational Bayes’ https://arxiv.org/abs/1312.6114
[BBHP+18] Burges et al ‘Understanding disentangling in beta-VAE’ https://arxiv.org/pdf/1804.03599.pdf
- class pyod.models.vae.VAE(encoder_neurons=None, decoder_neurons=None, latent_dim=2, hidden_activation='relu', output_activation='sigmoid', loss=<function mean_squared_error>, optimizer='adam', epochs=100, batch_size=32, dropout_rate=0.2, l2_regularizer=0.1, validation_size=0.1, preprocessing=True, verbose=1, random_state=None, contamination=0.1, gamma=1.0, capacity=0.0)[source]¶
Bases:
pyod.models.base.BaseDetector
Variational auto encoder Encoder maps X onto a latent space Z Decoder samples Z from N(0,1) VAE_loss = Reconstruction_loss + KL_loss
Reference See [BKW13] Kingma, Diederik, Welling ‘Auto-Encodeing Variational Bayes’ https://arxiv.org/abs/1312.6114 for details.
beta VAE In Loss, the emphasis is on KL_loss and capacity of a bottleneck: VAE_loss = Reconstruction_loss + gamma*KL_loss
Reference See [BBHP+18] Burges et al ‘Understanding disentangling in beta-VAE’ https://arxiv.org/pdf/1804.03599.pdf for details.
- Parameters
encoder_neurons (list, optional (default=[128, 64, 32])) – The number of neurons per hidden layer in encoder.
decoder_neurons (list, optional (default=[32, 64, 128])) – The number of neurons per hidden layer in decoder.
hidden_activation (str, optional (default='relu')) – Activation function to use for hidden layers. All hidden layers are forced to use the same type of activation. See https://keras.io/activations/
output_activation (str, optional (default='sigmoid')) – Activation function to use for output layer. See https://keras.io/activations/
loss (str or obj, optional (default=keras.losses.mean_squared_error) – String (name of objective function) or objective function. See https://keras.io/losses/
gamma (float, optional (default=1.0)) – Coefficient of beta VAE regime. Default is regular VAE.
capacity (float, optional (default=0.0)) – Maximum capacity of a loss bottle neck.
optimizer (str, optional (default='adam')) – String (name of optimizer) or optimizer instance. See https://keras.io/optimizers/
epochs (int, optional (default=100)) – Number of epochs to train the model.
batch_size (int, optional (default=32)) – Number of samples per gradient update.
dropout_rate (float in (0., 1), optional (default=0.2)) – The dropout to be used across all layers.
l2_regularizer (float in (0., 1), optional (default=0.1)) – The regularization strength of activity_regularizer applied on each layer. By default, l2 regularizer is used. See https://keras.io/regularizers/
validation_size (float in (0., 1), optional (default=0.1)) – The percentage of data to be used for validation.
preprocessing (bool, optional (default=True)) – If True, apply standardization on the data.
verbose (int, optional (default=1)) –
verbose mode.
0 = silent
1 = progress bar
2 = one line per epoch.
For verbose >= 1, model summary may be printed.
random_state (random_state: int, RandomState instance or None, opti) – (default=None) If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the r number generator; If None, the random number generator is the RandomState instance used by np.random.
contamination (float in (0., 0.5), optional (default=0.1)) – The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is to define the threshold on the decision function.
- compression_rate_¶
The ratio between the original feature and the number of neurons in the encoding layer.
- Type
- model_¶
The underlying AutoEncoder in Keras.
- Type
Keras Object
- history_¶
The AutoEncoder training history.
- Type
Keras Object
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- threshold_¶
The threshold is based on
contamination
. It is then_samples * contamination
most abnormal samples indecision_scores_
. The threshold is calculated for generating binary outlier labels.- Type
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly score of X using the fitted detector.
The anomaly score of an input sample is computed based on different detector algorithms. For consistency, outliers are assigned with larger anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The training input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y=None)[source]¶
Fit detector. y is optional for unsupervised methods.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (numpy array of shape (n_samples,), optional (default=None)) – The ground truth of the input samples (labels).
- fit_predict(X, y=None)¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')¶
DEPRECATED
- Fit the detector, predict on samples, and evaluate the model by
predefined metrics, e.g., ROC.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- scoringstr, optional (default=’roc_auc_score’)
Evaluation metric:
‘roc_auc_score’: ROC score
‘prc_n_score’: Precision @ rank n score
score : float
Deprecated since version 0.6.9: fit_predict_score will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency. Scoring could be done by calling an evaluation method, e.g., AUC ROC.
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)¶
Predict if a particular sample is an outlier or not.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X, method='linear')¶
Predict the probability of a sample being outlier. Two approaches are possible:
simply use Min-max conversion to linearly transform the outlier scores into the range of [0,1]. The model must be fitted first.
use unifying scores, see [BKKSZ11].
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
method (str, optional (default='linear')) – probability conversion method. It must be one of ‘linear’ or ‘unify’.
- Returns
outlier_probability – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- sampling(args)[source]¶
Reparametrisation by sampling from Gaussian, N(0,I) To sample from epsilon = Norm(0,I) instead of from likelihood Q(z|X) with latent variables z: z = z_mean + sqrt(var) * epsilon
- Parameters
args (tensor) – Mean and log of variance of Q(z|X).
- Returns
z – Sampled latent variable.
- Return type
tensor
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
pyod.models.xgbod module¶
XGBOD: Improving Supervised Outlier Detection with Unsupervised Representation Learning. A semi-supervised outlier detection framework.
- class pyod.models.xgbod.XGBOD(estimator_list=None, standardization_flag_list=None, max_depth=3, learning_rate=0.1, n_estimators=100, silent=True, objective='binary:logistic', booster='gbtree', n_jobs=1, nthread=None, gamma=0, min_child_weight=1, max_delta_step=0, subsample=1, colsample_bytree=1, colsample_bylevel=1, reg_alpha=0, reg_lambda=1, scale_pos_weight=1, base_score=0.5, random_state=0, **kwargs)[source]¶
Bases:
pyod.models.base.BaseDetector
XGBOD class for outlier detection. It first uses the passed in unsupervised outlier detectors to extract richer representation of the data and then concatenates the newly generated features to the original feature for constructing the augmented feature space. An XGBoost classifier is then applied on this augmented feature space. Read more in the [BZH18].
- Parameters
estimator_list (list, optional (default=None)) – The list of pyod detectors passed in for unsupervised learning
standardization_flag_list (list, optional (default=None)) – The list of boolean flags for indicating whether to perform standardization for each detector.
max_depth (int) – Maximum tree depth for base learners.
learning_rate (float) – Boosting learning rate (xgb’s “eta”)
n_estimators (int) – Number of boosted trees to fit.
silent (bool) – Whether to print messages while running boosting.
objective (string or callable) – Specify the learning task and the corresponding learning objective or a custom objective function to be used (see note below).
booster (string) – Specify which booster to use: gbtree, gblinear or dart.
n_jobs (int) – Number of parallel threads used to run xgboost. (replaces
nthread
)gamma (float) – Minimum loss reduction required to make a further partition on a leaf node of the tree.
min_child_weight (int) – Minimum sum of instance weight(hessian) needed in a child.
max_delta_step (int) – Maximum delta step we allow each tree’s weight estimation to be.
subsample (float) – Subsample ratio of the training instance.
colsample_bytree (float) – Subsample ratio of columns when constructing each tree.
colsample_bylevel (float) – Subsample ratio of columns for each split, in each level.
reg_alpha (float (xgb's alpha)) – L1 regularization term on weights.
reg_lambda (float (xgb's lambda)) – L2 regularization term on weights.
scale_pos_weight (float) – Balancing of positive and negative weights.
base_score – The initial prediction score of all instances, global bias.
random_state (int) – Random number seed. (replaces seed)
missing (#) –
If (# Value in the data which needs to be present as a missing value.) –
None (#) –
np.nan. (defaults to) –
importance_type (string, default "gain") – The feature importance type for the
feature_importances_
property: either “gain”, “weight”, “cover”, “total_gain” or “total_cover”.**kwargs (dict, optional) –
Keyword arguments for XGBoost Booster object. Full documentation of parameters can be found here: https://github.com/dmlc/xgboost/blob/master/doc/parameter.rst. Attempting to set a parameter via the constructor args and **kwargs dict simultaneously will result in a TypeError.
Note: **kwargs is unsupported by scikit-learn. We do not guarantee that parameters passed via this argument will interact properly with scikit-learn.
- decision_scores_¶
The outlier scores of the training data. The higher, the more abnormal. Outliers tend to have higher scores. This value is available once the detector is fitted.
- Type
numpy array of shape (n_samples,)
- labels_¶
The binary labels of the training data. 0 stands for inliers and 1 for outliers/anomalies. It is generated by applying
threshold_
ondecision_scores_
.- Type
int, either 0 or 1
- decision_function(X)[source]¶
Predict raw anomaly scores of X using the fitted detector.
The anomaly score of an input sample is computed based on the fitted detector. For consistency, outliers are assigned with higher anomaly scores.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples. Sparse matrices are accepted only if they are supported by the base estimator.
- Returns
anomaly_scores – The anomaly score of the input samples.
- Return type
numpy array of shape (n_samples,)
- fit(X, y)[source]¶
Fit the model using X and y as training data.
- Parameters
X (numpy array of shape (n_samples, n_features)) – Training data.
y (numpy array of shape (n_samples,)) –
The ground truth (binary label)
0 : inliers
1 : outliers
- Returns
self
- Return type
- fit_predict(X, y)[source]¶
DEPRECATED
- Fit detector first and then predict whether a particular sample
is an outlier or not. y is ignored in unsupervised models.
- Xnumpy array of shape (n_samples, n_features)
The input samples.
- yIgnored
Not used, present for API consistency by convention.
- outlier_labelsnumpy array of shape (n_samples,)
For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
Deprecated since version 0.6.9: fit_predict will be removed in pyod 0.8.0.; it will be replaced by calling fit function first and then accessing labels_ attribute for consistency.
- fit_predict_score(X, y, scoring='roc_auc_score')[source]¶
Fit the detector, predict on samples, and evaluate the model by predefined metrics, e.g., ROC.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
y (Ignored) – Not used, present for API consistency by convention.
scoring (str, optional (default='roc_auc_score')) –
Evaluation metric:
’roc_auc_score’: ROC score
’prc_n_score’: Precision @ rank n score
- Returns
score
- Return type
- get_params(deep=True)¶
Get parameters for this estimator.
See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Parameters
deep (bool, optional (default=True)) – If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
params – Parameter names mapped to their values.
- Return type
mapping of string to any
- predict(X)[source]¶
Predict if a particular sample is an outlier or not. Calling xgboost predict function.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. 0 stands for inliers and 1 for outliers.
- Return type
numpy array of shape (n_samples,)
- predict_proba(X)[source]¶
Predict the probability of a sample being outlier. Calling xgboost predict_proba function.
- Parameters
X (numpy array of shape (n_samples, n_features)) – The input samples.
- Returns
outlier_labels – For each observation, tells whether or not it should be considered as an outlier according to the fitted model. Return the outlier probability, ranging in [0,1].
- Return type
numpy array of shape (n_samples,)
- set_params(**params)¶
Set the parameters of this estimator. The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form
<component>__<parameter>
so that it’s possible to update each component of a nested object.See http://scikit-learn.org/stable/modules/generated/sklearn.base.BaseEstimator.html and sklearn/base.py for more information.
- Returns
self
- Return type
Module contents¶
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